PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g06670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 514aa    MW: 56805.4 Da    PI: 7.2323
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g06670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.22.7e-17333379455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L++llP++     +K +Ka++L +A+eY+ksLq
  CA07g06670 333 VHNLSERRRRDRINEKMKALQDLLPHS-----TKTDKASMLDEAIEYLKSLQ 379
                 6*************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.501329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-20332404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-18332383No hitNo description
PfamPF000101.1E-14333379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-20333387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-18335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MNPCLPEWNI EAEQPVPHQK KPMGFDHELV ELLWRNGEVV LHSQTHKKQP GYDPNECRHF  60
DKHVQPTIRV AGDQTNLLQD DETVSWLNCP IDDSFDKVFC SPFLSDISTA PLREADKSIR  120
QSEDNKVFKF DPLEINHVLP QSHHSGFDPN PMPPPRFNNF GSAQQQHHIG GNQKGVNFPP  180
PVRSSNMQLG GKEARSNLML QDIKEGSVMT VGSSHCGSNQ VAVDADTSRF SSSANRGLSA  240
ALITDYTGKI SPQSDTMDRD TFEPANTSSS GGSGSSYARA CNRSTATNSQ NHKRKSRDGE  300
EPECQSKADG LESAGGNKAQ KSGTARRSRA AEVHNLSERR RRDRINEKMK ALQDLLPHST  360
KTDKASMLDE AIEYLKSLQM QLQMMWMGSG MASLMFPGVQ HYMSRMGMGI SPQTVPSIHN  420
AMHLARLPLV DPSIPLTQAA PNQAAMCQNS MLNQVNYQRH LQNPNFQDQY ASYMGFHPLQ  480
GASQPMNIFG LGSHTAQQSQ QLPHPTNSNA PTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337342ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135820.0BT013582.1 Lycopersicon esculentum clone 132330F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580439.10.0PREDICTED: transcription factor PIF4
TrEMBLA0A1U8HIU30.0A0A1U8HIU3_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Z1M50.0A0A2G2Z1M5_CAPAN; transcription factor PIF4
STRINGPGSC0003DMT4000411560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.17e-44phytochrome interacting factor 3-like 6