PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g06810
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 1050aa    MW: 118588 Da    PI: 6.6133
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g06810genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22107208199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ F ++++L++gD+v+F +  +++ +l
  CA07g06810 107 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QELMARDLHDQAWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGDSVLFIR--DEKSQL 201
                 99*****************************954.5444.38************************************************4..466667 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 ++++ r+
  CA07g06810 202 LLGIKRA 208
                 8888765 PP
2Auxin_resp93.92.5e-312673321883
  Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 ras+seFv++++k++k+++++vs+GmRf+m+fete+s  rr++Gt++gvsdldp+rW+nS+Wr+L+
  CA07g06810 267 RASPSEFVIPLAKYSKSMYSQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPIRWKNSQWRNLQ 332
                 89**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-4395236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-4099222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-17106207No hitNo description
PfamPF023628.8E-20107208IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97107209IPR003340B3 DNA binding domain
SMARTSM010194.1E-21107209IPR003340B3 DNA binding domain
PfamPF065072.7E-26267332IPR010525Auxin response factor
SuperFamilySSF542773.99E-69731049No hitNo description
PROSITE profilePS5174523.9739811049IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MNSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK ETDGIPSYPN LPSKLICMLH  60
NVTLHADTET DEVYAQMTLQ PVNKYDQEAL LLSDMGLKQN RQPAEFFCKT LTASDTSTHG  120
GFSVPRRAAE KIFPPLDYSM QPPAQELMAR DLHDQAWTFR HIYRGQPKRH LLTTGWSVFI  180
SSKRLCAGDS VLFIRDEKSQ LLLGIKRANR QQPALSSSVI SSDSMHIGIL AAAAHAAANN  240
SPFTIFYNPR YYTHLLFLDL DPFVLDRASP SEFVIPLAKY SKSMYSQVSL GMRFRMMFET  300
EESGVRRYMG TITGVSDLDP IRWKNSQWRN LQVGWDESTA GERPSRVSIW DIEPVVTPFY  360
ICPPPFFRPK FHKQPSFPGD ESDIENVLKR GMPWISDEFG LKDAQSSIFP GLSLVQWMSM  420
QQNNHLPVAQ TGLASVLHSN IGTDDHSKLL NFQSPTLALP DLQFNKPNQL NQQFGQIQQP  480
PLAWAQQQQP PLQSPIIAQQ RQHTLQQQQQ HQQQQHLQQQ QQQQQQHSQQ QQQQQQQQPQ  540
QHMLHQQSQP QPQPQLHQQA QQQLQQKQRP SQQQHLTVNS SPVNHCVSPN QIPNQTFPQA  600
VIYGQLQQQQ VLSSSIQSQQ NVPVNRNPFP SPSLAQDLQF QQQVEQQSNL LQKSQQQHTI  660
PQEAPLQLLQ QSLMQRPQVQ PSSQQSLTEQ QLQLQLLNKL QQQQKQQAQL LSPVSCTLEP  720
RMSQQQQNRQ PQELQFAHQQ LSSSIMMAAT HLQSPQHAFN QLQNQNKLPI TIKGISGATD  780
GDAPSCSTSP STNNFQVSPP NFLTRNQEQA LQVDESVVDP SQEQNKSEFR IKHEPPFSKG  840
SEQSKYKASG TENLEAASST TSYGLDYSGF NFSLPALCVD GDVQSHSRSS LPSAVNNIDG  900
LNPDALLSRD YDSGKDMQNL FSPFGNAPKD IETELSDAGI NSQQFGVPNM SYKPRCASDL  960
AVIDNGVLNN NSWMNQTQRM RTYTKVQKRG SVGRTIDVTR YVGYDELRHD LARMFGIEGQ  1020
LEDPQRTEWK LVYVDHENDI LLVGDDPWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-168135351388Auxin response factor 5
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1215450.0EF121545.1 Solanum lycopersicum auxin response factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580334.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_016580336.10.0PREDICTED: auxin response factor 19-like isoform X3
TrEMBLA0A1U8HA360.0A0A1U8HA36_CAPAN; Auxin response factor
TrEMBLA0A1U8HII60.0A0A1U8HII6_CAPAN; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19