PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g08480

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 497aa MW: 54359.5 Da PI: 4.9077

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g08480	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	2e-09	318	366	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq CA07g08480 318 NSHSLAERIRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 366 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.25E-10	313	370	No hit	No description
SuperFamily	SSF47459	3.79E-17	313	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.466	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-17	316	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-7	318	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-10	321	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MDVETKNDSE PENRSDQEVS MNYQSPNMSS EWQLSGSNLT NASSMGMVDS FCPTTWDQST 60 NSPNLGFCDG NGQMDLGPFR VGVDRSLGPS WTPSNAMLLK GGMFLPPAPM MLPQSLAQFP 120 TDSGFIERAA RFSCFSGGNF GDMNPFSIPE SSMNPYYRGL APMQGPQEVL ASNVAESSKD 180 FSLTVDHTDT ERSPLKYEKK RENFAKSQDE AREIAGVSGN ESDEAGCSGR QEEMECAGEG 240 SYRKNIGSKK RKRGGQDTVP DQMKEAQQPP AEFLKGEQNL NSIASKPGGK NGKQGSQLSD 300 PTKEEYIHVR ARRGQATNSH SLAERIRREK ISERMKYLQD LVPGCNKVTG KAVMLDEIIN 360 YVQSLQRQVE FLSMKLATVN PRLDFDIDGL LEKDIFRSQA GPSSSLAFPP DMTMPYPPLH 420 PPHTGMLQSG LPSYGFSSDA FRRAINPHLA TTSCGPGDYK DPSSQAPNEW DTELHNIVQM 480 GLNSSAPLSS QDLSGI*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MDVETKNDSE PENRSDQEVS MNYQSPNMSS EWQLSGSNLT NASSMGMVDS FCPTTWDQST  60
NSPNLGFCDG NGQMDLGPFR VGVDRSLGPS WTPSNAMLLK GGMFLPPAPM MLPQSLAQFP  120
TDSGFIERAA RFSCFSGGNF GDMNPFSIPE SSMNPYYRGL APMQGPQEVL ASNVAESSKD  180
FSLTVDHTDT ERSPLKYEKK RENFAKSQDE AREIAGVSGN ESDEAGCSGR QEEMECAGEG  240
SYRKNIGSKK RKRGGQDTVP DQMKEAQQPP AEFLKGEQNL NSIASKPGGK NGKQGSQLSD  300
PTKEEYIHVR ARRGQATNSH SLAERIRREK ISERMKYLQD LVPGCNKVTG KAVMLDEIIN  360
YVQSLQRQVE FLSMKLATVN PRLDFDIDGL LEKDIFRSQA GPSSSLAFPP DMTMPYPPLH  420
PPHTGMLQSG LPSYGFSSDA FRRAINPHLA TTSCGPGDYK DPSSQAPNEW DTELHNIVQM  480
GLNSSAPLSS QDLSGI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-176	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016548303.1	0.0	PREDICTED: transcription factor bHLH49 isoform X1
TrEMBL	A0A2G2Z0X4	0.0	A0A2G2Z0X4_CAPAN; Transcription factor bHLH63
STRING	PGSC0003DMT400050585	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-108	bHLH family protein