PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g08690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HB-PHD
Protein Properties Length: 363aa    MW: 40770.2 Da    PI: 4.5332
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g08690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.21e-06329361941
                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLte 41 
                 ++ +eeL ++F++n  ps++ re L+kklg++ 
  CA07g08690 329 PDAVEELRRVFAENELPSRDVRENLSKKLGIEY 361
                 7889**************************986 PP
2PHD34.83.7e-1257112151
                 SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C+ C+   + ++++++lCd +C+ +fH+kCl+++l++e++p +   w+C+ Ck+k
  CA07g08690  57 ICAKCKLqeAFSDNDIILCDgTCNCAFHQKCLDPPLSTENIPPDdeGWFCKFCKCK 112
                 588888854556********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.02E-1449115IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-1153113IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.21155112IPR019787Zinc finger, PHD-finger
PfamPF006281.5E-957112IPR019787Zinc finger, PHD-finger
SMARTSM002492.1E-957110IPR001965Zinc finger, PHD-type
PROSITE patternPS01359058109IPR019786Zinc finger, PHD-type, conserved site
CDDcd155041.15E-2758109No hitNo description
SuperFamilySSF466893.68E-5317358IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-6317360IPR009057Homeodomain-like
CDDcd000862.21E-4321359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
REKIRPEKEL QRAKKQILNC KLGIREIVHH LDLLSSAGQI DDSAIAPDGS VHHDHIICAK  60
CKLQEAFSDN DIILCDGTCN CAFHQKCLDP PLSTENIPPD DEGWFCKFCK CKMEIIEATN  120
AHIGTHFAMD SNWEDIFKEE ALRPEGEESL LCPEQDWPSD DSEDDDYDPE KVANSHSSTD  180
SFDSGSSSEG SSGSMLESLE DELLALTGKP EGGSSGKDYL SKQIAGLDYE ETTDVDVLSA  240
PRQRRAVDYI KLNDEMFGKH APAIEQNSED EDWGPGKRKR RRKESESDAA STLITLFKSE  300
KSCSEKTANK VEKESFGRPA KREIFRIPPD AVEELRRVFA ENELPSRDVR ENLSKKLGIE  360
YEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281KRKRRR
2276282KRKRRRK
3277281RKRRR
4277283RKRRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-140HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580059.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
RefseqXP_016580060.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
RefseqXP_016580061.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-112PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A1U8H9N20.0A0A1U8H9N2_CAPAN; Pathogenesis-related homeodomain protein
TrEMBLA0A2G2Z1470.0A0A2G2Z147_CAPAN; pathogenesis-related homeodomain protein isoform X1
STRINGSolyc07g008730.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.27e-75pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]