PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g08980
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 227aa    MW: 25711.2 Da    PI: 8.4427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g08980genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-132870754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  CA07g08980 28 VSERNRRKKVNERLFALRAVVPNiS------KMDKASIIKDAIDYIQNL 70
                57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-172185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2152170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-122475No hitNo description
Gene3DG3DSA:4.10.280.102.7E-152784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-142776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-112870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
YFDEAISSYY DSSSPDGAQS SMASKNIVSE RNRRKKVNER LFALRAVVPN ISKMDKASII  60
KDAIDYIQNL HEQERRIRAE ILVLESGRSK KNSDVEFDQD GSFDSKAKRS KRLEQKYEYD  120
SSGSTTRSSP SSFPVDVLEL RVSSMGENTV VVSLTCSKRT DTMIKVCEVF ESLNIKIISA  180
NITAFSGRLL KTAFIEVTVS FFFFFVTLFL CFILSFVFFS TIDFFQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536454e-69AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence.
GenBankAC2536764e-69AC253676.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-50e11 map 7, complete sequence.
GenBankHG9754464e-69HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755194e-69HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550047.11e-139PREDICTED: transcription factor bHLH35-like isoform X1
RefseqXP_016550058.11e-139PREDICTED: transcription factor bHLH35-like isoform X3
SwissprotQ2HIV92e-67BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1U8ES371e-138A0A1U8ES37_CAPAN; transcription factor bHLH35-like isoform X1
TrEMBLA0A1U8ESD21e-138A0A1U8ESD2_CAPAN; transcription factor bHLH35-like isoform X3
STRINGXP_009760780.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.33e-66bHLH family protein