PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g12440

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 206aa MW: 22947.1 Da PI: 8.6328

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g12440	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.6	4.5e-20	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+++ rq t+sk + + KKA+EL +LCd++va+++fs+tg++ yss CA07g12440 9 KKIEDSTSRQRTYSKHKDSLVKKANELAILCDTDVALLMFSPTGEVTRYSS 59 68**********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.773	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.8E-25	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-23	2	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-19	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MGRNKLVMKK IEDSTSRQRT YSKHKDSLVK KANELAILCD TDVALLMFSP TGEVTRYSSR 60 GSVEDVMLRI VNNPGELNRG YFHLTFNMPL LQHLAQSLTE SKHEGQMVEK IADHKKKLMM 120 LNQKLSEARE KLRCYEPQVE NISSVQEADA YQEFLLSAME QIRSQARLLG GKGYLQTNEN 180 VGVASVNAEV TAAAGNGSAY SNPYS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016580676.1	1e-134	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
Refseq	XP_016580677.1	1e-134	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
Refseq	XP_016580678.1	1e-134	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
TrEMBL	A0A1U8HB62	1e-133	A0A1U8HB62_CAPAN; agamous-like MADS-box protein AGL66 isoform X1
STRING	XP_009776411.1	1e-80	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5292	18	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-25	AGAMOUS-like 104