PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g12450

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 210aa MW: 23760.2 Da PI: 8.8708

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g12450	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47	3.2e-15	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ie+ + rq t+sk + KKA EL +LCd++v +++fs+t+++ yss CA07g12450 10 KIEDPTFRQQTYSKLKDRFVKKADELAILCDTDVGLLMFSPTDQVTSYSS 59 79*********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-18	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.212	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-20	2	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-12	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-16	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGRNKRVMEK IEDPTFRQQT YSKLKDRFVK KADELAILCD TDVGLLMFSP TDQVTSYSSR 60 GSVEDIMLRV VNRYGNPYRQ PNPNEQVLSF THLLLIALCR KVLGVTSNLN MPFVAAFDAE 120 SHTVKICRTN GGQASYAHEA ELMKLNQRLR EAQEKMRYYE PQVEKISSVQ EADACQKFLM 180 SAMEQIQRSK ARILGGEGFV QGNENVAVK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016579435.1	1e-104	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
Refseq	XP_016579436.1	1e-104	PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
TrEMBL	A0A2G2Z2N2	1e-154	A0A2G2Z2N2_CAPAN; Uncharacterized protein
STRING	XP_009776411.1	3e-66	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5292	18	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	1e-23	AGAMOUS-like 66