PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g12500
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 307aa    MW: 34615.2 Da    PI: 6.7661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g12500genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66e-051742111355
                 HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 R+++ ++   L +llP++     kK++ a++Le+A +Y+k Lq
  CA07g12500 174 RQKLSEKTRCLEKLLPWD-----KKMDTATMLEEAYKYVKFLQ 211
                 6777777777999****9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.954161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-9165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0044167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-8168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-4171215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MERKSLVPQA GGESLLPLME TDEAAAFING MYAGMSYSSL LSLSIDNNPN YEPPLVNDHM  60
VCATGAASEI QQSLETEHFN ADQKLKFPKL EVPVVNDTPF QLYPYNNEYF LNEPFNYEGF  120
GYQNLPDLRC LKQTNYFDFH YGDSSSSLVS NRVEPSNFPK RKQPPSSSTA RLQRQKLSEK  180
TRCLEKLLPW DKKMDTATML EEAYKYVKFL QAQVSVLQNM PLLSEGGASS SSSEDKNGKS  240
TSVFGKLGRL NRQQLLEVVL NSPVAQTYLY SKGCCVYSVE QLVQYRKIAQ RNALYRQMLF  300
YAGMPS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535911e-33AC253591.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone hba-13d24 map 7, complete sequence.
GenBankAC2536111e-33AC253611.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence.
GenBankHG9754461e-33HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-33HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579439.10.0PREDICTED: transcription factor bHLH103
TrEMBLA0A1U8HG440.0A0A1U8HG44_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Z2S60.0A0A2G2Z2S6_CAPAN; transcription factor bHLH103
STRINGPGSC0003DMT4000672871e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112501821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.14e-24bHLH family protein