PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA07g13700

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 225aa MW: 25839.9 Da PI: 9.8404

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g13700	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.2	6e-10	10	47	2	39
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 + +++ nr+ t kR++ + KK + L +LC++++++ii CA07g13700 10 FTQDHKNRKSTCVKRKASLVKKISKLAILCGIKACMII 47 567899*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.213	1	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-13	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-7	1	64	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-9	12	47	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGRAKINMEF TQDHKNRKST CVKRKASLVK KISKLAILCG IKACMIIDGG ITDQDISQHD 60 QIWPNDPKQV HELINLYKAQ PLQGRSKRAK TLSNFFENQK KKVEVKAENY PTWDSRFDYL 120 SEKELRNLAC VLERRIENAK GKAGFLKRTN IGSSSLLSRQ EILDYTELMN YNNNLMNQTT 180 SWWPSIDYNF FQANIPSGVN SMGVEWIIDL LLPLIINLTM QIIL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016555459.1	1e-167	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A1U8FGK9	1e-166	A0A1U8FGK9_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2Z3S8	1e-166	A0A2G2Z3S8_CAPAN; agamous-like MADS-box protein AGL82
STRING	PGSC0003DMT400085676	7e-66	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6342	12	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	7e-19	M-type_MADS family protein