PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g14120
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SBP
Protein Properties Length: 106aa    MW: 11722.3 Da    PI: 9.3281
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g14120genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP46.78.7e-153771236
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEET CS
         SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvs 36
                Cq+e+C++dl++ak+yh+rhkvCe h+k++vv+  
  CA07g14120 37 CQAEKCSVDLNDAKQYHKRHKVCENHAKSQVVVXX 71
                ******************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-133070IPR004333Transcription factor, SBP-box
PROSITE profilePS5114111.00734105IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-133670IPR004333Transcription factor, SBP-box
PfamPF031103.4E-93770IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
LKSMEKNDDM LSIIEDAKKK NKKGSPNSSS SSLTRSCQAE KCSVDLNDAK QYHKRHKVCE  60
NHAKSQVVVX XXXGNASANN AAGLITCSIF SFLNHNFILH LFYFI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579477.18e-42PREDICTED: squamosa promoter-binding protein 1-like
TrEMBLA0A2G2Z3W92e-66A0A2G2Z3W9_CAPAN; Squamosa promoter-binding-like protein 3 (Fragment)
STRINGPGSC0003DMT4000827895e-17(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.21e-10squamosa promoter binding protein-like 8