PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g14200
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 421aa    MW: 47023.1 Da    PI: 7.8577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g14200genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09130150526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C+ f++ G C++Gd+C FaHg
  CA07g14200 130 VCSEFRK-GNCSRGDNCEFAHG 150
                 7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.44E-5124154IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6125151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45126152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5129152IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-7130150IPR000571Zinc finger, CCCH-type
SMARTSM003562.4160183IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287160184IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEGLCAELHH HKFHPSHQLY KKSLRDIDIP PRKLLSRRST LSSVDSDVFD SPKSGFGPET  60
DTLFQKFLPY NSLDDDDADP YSSDHFRMYE FKVRRCTRSR SHDWTDCPFA HPGEKARRRD  120
PRRFHYSGTV CSEFRKGNCS RGDNCEFAHG VFECWLHPSR YRTEACKDGK NCKRKVCFFA  180
HTPRQLRVLP PSCHDSGSSP SPRNSPVDKK YRNLSHCCVF CHSVSASPTS TLIGMSHISP  240
PVSPSFSPPL SPAHRTQFSS PVSRYTDRFG GLGSVESSSV GQMDPTGLMS YKDALTELVS  300
SLEAMNVNHE PVSSPASASH QAHFDGNLPW LDVNFSNNNG YDDQQQFLLS PSTPLPSPIS  360
NSRSKFYARE FPSPSPISTS RLSFVEEPNN NNNNSATNKY YSDNGLGGGP DLGWVNDLLT  420
*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580788.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A2G2Z3X60.0A0A2G2Z3X6_CAPAN; Zinc finger CCCH domain-containing protein 49
STRINGPGSC0003DMT4000828140.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-77C3H family protein