PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g14560
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 271aa    MW: 29098.1 Da    PI: 5.658
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g14560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-2976133359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers  dp+++ itY ++Hnh+
  CA07g14560  76 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSCLDPTMLLITYCSDHNHQ 133
                 99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-3066135IPR003657WRKY domain
PROSITE profilePS5081130.66469135IPR003657WRKY domain
SuperFamilySSF1182901.44E-2570135IPR003657WRKY domain
SMARTSM007741.5E-3474134IPR003657WRKY domain
PfamPF031061.4E-2476133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEDRLYKSSF FHKQEDSTGT PPDNAADSCF SGDEAAEVNM PSPRKSRRGA KRKVISVPII  60
EADGSRSKGE VYPPPDSWSW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSCLDPT  120
MLLITYCSDH NHQLPAAAAT ATKHHHTAAA GATSPSTSTG TAVDINPSAA SDTAKKSSPE  180
EQETNIFAGF SEFAGELGWF SDMGTSTLME SASTSATSIV GSTWNDSDVA LMLAIREEDQ  240
SLYGDLGELP ECSFVFRRYS VETTCCGGTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-2052135679Disease resistance protein RRS1
5w3x_D5e-2052135679Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652RRGAKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132841e-162BT013284.1 Lycopersicon esculentum clone 134891F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580885.10.0PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBLA0A2G2Z4100.0A0A2G2Z410_CAPAN; Uncharacterized protein
STRINGSolyc07g055280.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-60WRKY DNA-binding protein 65