PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g14840
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 250aa    MW: 27455.2 Da    PI: 8.0657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g14840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-1356102354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN  + +Lr l+P        K++Ka+ L k++ +Ik+L
  CA07g14840  56 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVIGHIKEL 102
                 58*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.28153102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1056102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-1456107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1457108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1059108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.17E-4141208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDFFNSFNGV YEDYGRFGGS SSSSLILDNE SGELVKALVK PGQKGVNPEK ALIALKNHSE  60
AERRRRERIN GHLGTLRNLI PGTNKMDKAA LLAKVIGHIK ELRMNAAEVT KGVLVPTDID  120
EVKVEQQAEG SDGATYSVKA SLCCDYKHEL ISDLRQALDT LPLKTLRAEI ATLGSRMISV  180
FVITEGNEGN IEDIERCQLL VTSVRQALRS VLDKFYASEE FSSRSTLSSK RRRISLLNSS  240
SSSSVGDFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166ERRRRE
2229233KRRRI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556660.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1U8FD840.0A0A1U8FD84_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Z4690.0A0A2G2Z469_CAPAN; transcription factor bHLH30-like
STRINGPGSC0003DMT4000526221e-147(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-31bHLH family protein