PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g15230
Common NameAGL1, LOC107878477
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 22210.2 Da    PI: 10.3159
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g15230genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.91e-313079150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  CA07g15230 30 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 79
                79***********************************************8 PP
2K-box108.76.6e-3697192398
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 ++s+ s +ea+++++qqe++kL+++i+ +q+ +R+++Ge L+sLs ++L++Le +Lek++ ++RskKnell+++ie++qk+e elq++n++Lr+k+
  CA07g15230  97 STSTGSISEANTQYYQQEASKLRRQIRDIQTYNRQIVGEALSSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIEHMQKREIELQNANMYLRAKV 192
                 45556699*************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-412281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2072282IPR002100Transcription factor, MADS-box
CDDcd002652.69E-442399No hitNo description
SuperFamilySSF554551.31E-332398IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-332444IPR002100Transcription factor, MADS-box
PfamPF003196.1E-273178IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-334459IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-335980IPR002100Transcription factor, MADS-box
PfamPF014862.5E-26106192IPR002487Transcription factor, K-box
PROSITE profilePS5129714.145108193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MVFPNNHELD ESSSQLRKSS GGGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC  60
DAEVALIVFS SRGRLYEYAN NSVRATIDRY KKHHADSTST GSISEANTQY YQQEASKLRR  120
QIRDIQTYNR QIVGEALSSL SPRDLKNLEG KLEKAIGRVR SKKNELLFSE IEHMQKREIE  180
LQNANMYLRA KVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-2123106186Myocyte-specific enhancer factor 2A
3kov_B3e-2123106186Myocyte-specific enhancer factor 2A
3kov_I3e-2123106186Myocyte-specific enhancer factor 2A
3kov_J3e-2123106186Myocyte-specific enhancer factor 2A
3p57_A3e-2123106186Myocyte-specific enhancer factor 2A
3p57_B3e-2123106186Myocyte-specific enhancer factor 2A
3p57_C3e-2123106186Myocyte-specific enhancer factor 2A
3p57_D3e-2123106186Myocyte-specific enhancer factor 2A
3p57_I3e-2123106186Myocyte-specific enhancer factor 2A
3p57_J3e-2123106186Myocyte-specific enhancer factor 2A
5f28_A4e-2123106287MEF2C
5f28_B4e-2123106287MEF2C
5f28_C4e-2123106287MEF2C
5f28_D4e-2123106287MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5659420.0HM565942.1 Capsicum annuum AGAMOUS-LIKE1 (AGL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312039.11e-138floral homeotic protein AGAMOUS-like
RefseqXP_016580971.11e-138PREDICTED: floral homeotic protein AGAMOUS-like
RefseqXP_016580972.11e-138PREDICTED: floral homeotic protein AGAMOUS-like
SwissprotQ93XH46e-99MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A1U8HC441e-136A0A1U8HC44_CAPAN; floral homeotic protein AGAMOUS-like
TrEMBLA0A2G2WG161e-136A0A2G2WG16_CAPBA; Floral homeotic protein AGAMOUS (Fragment)
TrEMBLA0A385MJ941e-136A0A385MJ94_CAPAN; AGAMOUS-like protein 2
TrEMBLE3UT591e-136E3UT59_CAPAN; AGAMOUS-LIKE1
STRINGXP_009612078.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.12e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]