PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g16740
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 258aa    MW: 29516.8 Da    PI: 9.3756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g16740genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-1099145654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   +Er+RR+++ + +++Lr l+P+       +K s ++ Le+ v+Y+k+L
  CA07g16740  99 RDVERQRRRDMAKLYQRLRLLIPSkY---LMGKRSISDHLEQIVDYVKDL 145
                 679*********************77...9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-1092161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.90393145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-797163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-799145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDDSEFDFGQ LDQLFNFLSS LPPPTPPPTT FQNQDSSISL QTQNSNHVPK KKPIVTNHHH  60
HHVIKKKPIK ISNINNDDQV QNPPKEKEKI AEKKKVIRRD VERQRRRDMA KLYQRLRLLI  120
PSKYLMGKRS ISDHLEQIVD YVKDLRKDIE DLERKRETLK QLKSTICSSQ LAPSSSSMKL  180
NEPLNDDDDD DRINVKSCNE GVEISIKGGL SLSNVLKVVM KEGFIVSSCV SSTVNQELIH  240
IIQTKVSCLI FSNYLNF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755197e-90HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579520.11e-178PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1U8H8531e-177A0A1U8H853_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Z4V51e-177A0A2G2Z4V5_CAPAN; transcription factor bHLH118-like
STRINGSolyc07g062200.1.14e-97(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128311118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.11e-15bHLH family protein