PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g20160
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 592aa    MW: 64450 Da    PI: 7.9485
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g20160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31230287260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  CA07g20160 230 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 287
                 8****************************************.***************85 PP
2WRKY105.62.6e-33412470159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  CA07g20160 412 LDDGYKWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 470
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-26220288IPR003657WRKY domain
PROSITE profilePS5081122.355224288IPR003657WRKY domain
SuperFamilySSF1182902.22E-24225288IPR003657WRKY domain
SMARTSM007743.4E-33229287IPR003657WRKY domain
PfamPF031069.2E-24230286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37397472IPR003657WRKY domain
SuperFamilySSF1182903.01E-29404472IPR003657WRKY domain
PROSITE profilePS5081138.595407472IPR003657WRKY domain
SMARTSM007749.0E-39412471IPR003657WRKY domain
PfamPF031065.9E-26413470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MANSHAEQLT NGRTSASSXX XNGGGAVAKY KLMTPAMLPI SRSTCITIPP GLSPSSFLES  60
PLLLSNIKAE PSPTTGSFSK FQTVQGSGGA AAFLLTRGYS SSNSYIERKS SCFEFKNASG  120
SSSTSGSFAT EHVISTGFNQ QQNDPLKEVQ DQSHRQLLVP SSLAKLEMES SKELSISAPV  180
NVDASSKEES LCQPINVDAM NPGGPSNASM QGSHADHKDV SSVTSERSSD DGYNWRKYGQ  240
KLVKGSEFPR SYYKCTYPNC EVKKIFERSP EGQITEIVYK GSHDHPKPQL CRRFSPGSLV  300
SIQEDKCEKE ACFRGQEVNL YRFSVYVEDK FNTNVQTNKI EPGSTPVSPQ TDTDALEGAA  360
SQMQGTNDDM DEDDQFAKRS RKMDGGMDVT PVIKPIREPR VVVQTVSEVD ILDDGYKWRK  420
YGQKVVRGNP NPRSYYKCTN AGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPTARNNNHE  480
MTGSTPVTGG SRIRAEQTNS LSLDLGVGTG YHLDNGNNGQ LHTLHNQVQV SRSGMMLVQP  540
GAVVARYGIV HNGMSRFGAI DNRVQGPSFE TLPLQPSTQS LQSYGKILLG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36230472877Probable WRKY transcription factor 4
2lex_A2e-36230472877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581391.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
TrEMBLA0A2G2Z6270.0A0A2G2Z627_CAPAN; Putative WRKY transcription factor 33
STRINGPGSC0003DMT4000574090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-132WRKY family protein