PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g01000
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 686aa    MW: 78306.4 Da    PI: 7.3765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g01000genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-08115136426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C+ff++ G+C+ Gd C F+H 
  CA08g01000 115 VPCKFFQQ-GICRNGDYCAFMHA 136
                 79******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.3712250IPR000571Zinc finger, CCCH-type
SMARTSM003560.0362249IPR000571Zinc finger, CCCH-type
PfamPF156631.7E-112476No hitNo description
PROSITE profilePS5010311.4225278IPR000571Zinc finger, CCCH-type
SMARTSM003560.00335477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699111138IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5111137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-7112136IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6114136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4115136IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MGVEMAVEMV GLSAEEEEAV VKGKTDCVYF LASPFTCKKG SECEYRHSDM ARLNPRDCRY  60
WLNGNCLNPT CAYRHPPLDG LSEARVPTAM GYSIAPMMPV APMLQVPYVL SKQSVPCKFF  120
QQGICRNGDY CAFMHAPSFF PNKPAQPPVS TASSDTSTVK KVFGGVEKSM EVKELSDINA  180
PTPVELPKPT RKLEIHLNKK VNTFDEKVLP PNSVVNRQHS EYKPTSIPPT SGNPFRVPNR  240
MQRPIGIDDH RSMQYKGDGI SREPSPGFDV LVDDELKGSD YYHDEDLYGG TRENVRRNEC  300
EKGDSGDYDS VEDIERDMYR DVRGYDRIQN RRALEQLIAS SEIKPGGSAH LERRRYGRVD  360
SPERVQRSDV RHRLSRHRRD NDLKSVIDHD FSREKHFEDR TEKSSRRDVH YLPSHDNSLS  420
GRFRGRIKLP VRSSSLADRG ELWLDREMDK GRDRGRLTSE RLRLDREMDR GRDRGRLISE  480
RPQLYSYQGR PRDGIKGRLQ EDLNNDSRNN RFPRRRRDEI NDNKSEFLRP KSLAEVKGRR  540
TAKSNEQQPL RKRKFQKLDS TEDLSFEGPM PLKEILKRKR GGGGGMPSGG SEHDQRERKE  600
RTSMTAGNVN FPSAFTKNVS DLPIQNLENE LQADEEKMVV EGAGGLGDEP VEGEDYIFDE  660
GDPDDEFSDE DDDEFARKLG VVPRK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537417.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A1U8DQY30.0A0A1U8DQY3_CAPAN; zinc finger CCCH domain-containing protein 17-like
STRINGPGSC0003DMT4000422530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633