PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g01130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 355aa    MW: 40177.2 Da    PI: 8.1939
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g01130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-062244123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++C++ F r  nL+ H r+H
  CA08g01130 22 YICEICNQGFQRDQNLQMHRRRH 44
                89********************9 PP
2zf-C2H217.51.1e-05100121223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++Cgk +  +s++k H++t+
  CA08g01130 100 ICEKCGKGYAVQSDYKAHLKTC 121
                 7*******************98 PP
3zf-C2H211.30.0011129147523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg++Fsr +++  H+ t+
  CA08g01130 129 DCGRVFSRVESFIEHQDTC 147
                 9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.62E-62144No hitNo description
Gene3DG3DSA:3.30.160.609.7E-62144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8662244IPR007087Zinc finger, C2H2
SMARTSM003550.00652244IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
PROSITE patternPS01359024104IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003552406393IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-590120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.62E-694119No hitNo description
SMARTSM003554499126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLDPDAEVVS LSPKTLLESD RYICEICNQG FQRDQNLQMH RRRHKVPWKL VKNENPQVKK  60
RVFVCPESSC LHHDPCHALG DLVGIKKHFR RKHSNNKQWI CEKCGKGYAV QSDYKAHLKT  120
CGTRGHSCDC GRVFSRVESF IEHQDTCTVR RSVRPDLQTL QPTTACSSRT ASSTSPSSDT  180
NLQKITTMPL QHNLELGLLP SITTTSHDQH HENHHQEPHL KLSIGGSSSS QCIVPKNGQE  240
ENEVVLNLAM AERAYAEEAR RHAKREMEYA EMEFANAKRI RQQAQGEIER ARKLKEEAIK  300
KISSSILEIT CHACKNKFQQ NAPIENNNNN NNNNIESSPA MSYMSSATDI EGEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-1797147555Zinc finger protein JACKDAW
5b3h_F2e-1797147555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-137HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537468.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-139IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A1U8DR140.0A0A1U8DR14_CAPAN; protein SHOOT GRAVITROPISM 5
STRINGXP_009610524.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-121indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]