PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g01240
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 250aa    MW: 27421.7 Da    PI: 6.5822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g01240genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001597119123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C + F ++  L  H++ H
  CA08g01240  97 FSCNFCRRKFYSSQALGGHQNAH 119
                 89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.72E-695124No hitNo description
PROSITE profilePS5015711.19897124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKPPNFNLES EEDESEVSSS QVASNISAQE ISPDPYRDST TNSSCLTNSI NLHQELKPVT  60
LDLTLGFNCS DTELKVNPEA GDEVVPHPPA APVSRIFSCN FCRRKFYSSQ ALGGHQNAHK  120
RERTLAKRAM RMGILSERYA SLASLPLHGS PYRSLGIEAH ASVHQRASQQ HERHMHAAIR  180
GGARFEQGYF GVPVYMDDDD VEMFWPGSFR QVDAVSSNVV GLNSGHLVAM APPPSRTQPP  240
SLPDLNLKL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537456.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392633e-43ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A1U8DTG80.0A0A1U8DTG8_CAPAN; Zinc finger protein 1
TrEMBLA0A2G2YW230.0A0A2G2YW23_CAPAN; zinc finger protein 4-like
STRINGSolyc01g005130.2.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.18e-44zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]