PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g01300

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 305aa MW: 33429.9 Da PI: 8.2221

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g01300	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H CA08g01300 112 FSCNFCKREFSTSQALGGHQNAH 134 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.74E-6	109	139	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.8E-4	109	138	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.531	112	139	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MDIFAMKKPC SSEASSISAA SEESHEVVTN TKKMKENVVE GPQLNKPSCV DLLVDLKVHN 60 GFNNNNNKTN SMISCSNLEP NLFNSTSTNT HASESSNEAT PKQKRTSDGR TFSCNFCKRE 120 FSTSQALGGH QNAHKQERAL AKRRNGPVDV VSPFGPPNYH PYYNPYSNFN SHIPFHGSFA 180 SRPSLGGTVQ GGNSFSAILK PTTSYQTWPF LSSYNFRFNL DKWSISSSSS SLFRSENPQE 240 NYNIGKIGIG GASLANSVSF ENKKIGNNLT LMNSPINVDD DNNLGGNNHM KKEEEEGLDL 300 NLKL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016581618.1	0.0	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A1U8HK67	0.0	A0A1U8HK67_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2YW09	0.0	A0A2G2YW09_CAPAN; zinc finger protein 6-like
STRING	Solyc01g005190.1.1	1e-114	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	4e-16	C2H2 family protein