PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g01690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 553aa    MW: 62950.6 Da    PI: 5.9444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g01690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11334377654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A+eY+ +L
  CA08g01690 334 LMAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 377
                 589*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-156153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.44328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-12330382No hitNo description
SuperFamilySSF474593.01E-16331391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9334378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-16335391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MELMHLMDRL RPVMGLKSWD YCVLWKLSED QRFLEWICCC CGGADKNMHS CEQELFFPDS  60
STSTCRDVMF QHPRTIACDL LAQLPPSLAL DCGTYAMALL SNQAKWMNFV PFSISNMTNE  120
IMGTRALVPS PLGLLELFST QQLPEDEEVI EFVSAQCNIY VEQQAMTNSI FSDGVEESTS  180
KPFPLEGDDH IKVSQNHYQQ TVSPAATSRG HSDNLSYDFP LKRKHLDTSS MNFLPQLSTY  240
STPEVYNKTG GNMLFDQRTS DVTHFSENRY MSEMDAYLQK QMMRSSSTQS AIDDESVKHD  300
NGRSNSGSDS DQNEEEDDPK YRRRNGKGPQ SKNLMAERKR RKKLNERLYA LRALVPKISK  360
LDRASILGDA IEYVMELEKQ VKDLQLELEE HSDDEGRRNQ DQIHPDVLSH NGTKNGPKSE  420
NGKRSNGKGH RELSTNSNGS TDPFRKIQEV EENDKLQQME PQVEVAQLEG NEFFVKVFRE  480
HKTGGFVRIL EALNSLGLEV TNVNATRHTC LVSNIFKVEV SDIFFNHSHP TPYSTTHKEK  540
KNLRPTFTKR IA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-123363871263Transcription factor MYC2
5gnj_B3e-123363871263Transcription factor MYC2
5gnj_E3e-123363871263Transcription factor MYC2
5gnj_F3e-123363871263Transcription factor MYC2
5gnj_G3e-123363871263Transcription factor MYC2
5gnj_I3e-123363871263Transcription factor MYC2
5gnj_M3e-123363871263Transcription factor MYC2
5gnj_N3e-123363871263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321342RRRNGKGPQSKNLMAERKRRKK
2336343ERKRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537580.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X2
TrEMBLA0A2G2YWS10.0A0A2G2YWS1_CAPAN; Uncharacterized protein
STRINGSolyc08g062780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-115bHLH family protein