PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g02860

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YA

Protein Properties

Length: 185aa MW: 20891.3 Da PI: 9.7802

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g02860	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.9	6.1e-32	48	102	3	58
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++IlkRRq Rakle+++kl k rkpylh+SRh+hA+ R+RgsgGrF CA08g02860 48 PIYVNAKQYNAILKRRQVRAKLEAQNKL-VKDRKPYLHDSRHRHAMERARGSGGRF 102 9*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.1E-36	44	105	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.722	45	105	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.5E-24	48	70	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-28	48	102	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	50	70	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.5E-24	79	102	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
ACVSYPWADS YFGRLISTYE SNAINYPQRA GVTSTRVALP LDCTESLPIY VNAKQYNAIL 60 KRRQVRAKLE AQNKLVKDRK PYLHDSRHRH AMERARGSGG RFLNTKNMQQ SNPSSPKHDK 120 NIFKQQAGAM VQHSESGSWG TSTQSGSDVT SIFNDDDMFR QPEFRVSGFP FHMQEAEDFM 180 HVGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-23	48	107	4	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ865409	1e-178	KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome.
GenBank	KJ865410	1e-178	KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016537697.1	1e-138	PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBL	A0A1U8DRR5	1e-137	A0A1U8DRR5_CAPAN; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A2G2YWP6	1e-137	A0A2G2YWP6_CAPAN; nuclear transcription factor Y subunit A-3-like
TrEMBL	A0A2G3BRT9	1e-137	A0A2G3BRT9_CAPCH; Uncharacterized protein (Fragment)
STRING	XP_009769785.1	1e-117	(Nicotiana sylvestris)
STRING	XP_009608945.1	1e-117	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4800	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	7e-41	nuclear factor Y, subunit A6