PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g02890

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 256aa MW: 28159 Da PI: 9.1184

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g02890	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.4	1.2e-38	44	143	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+Ca+dC+lapyfpa+++k+f n+hklFG+sn+lk+lk++++ ++++am++l++eA++ra dPv G++++il+l++q++ +ael+ + + CA08g02890 44 ACAACKYQRRRCAPDCPLAPYFPAKRHKDFLNAHKLFGVSNILKVLKNVSPFQKDNAMKALIFEANIRAGDPVGGCYRTILNLHRQINLCQAELQFVYR 142 7********************************************************************************************998766 PP DUF260 100 e 100 + CA08g02890 143 Q 143 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.434	43	144	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-37	44	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MTNVVNNNTQ NISYLRSSLT TRSSTAAARV ASQGGGSGGN GSQACAACKY QRRRCAPDCP 60 LAPYFPAKRH KDFLNAHKLF GVSNILKVLK NVSPFQKDNA MKALIFEANI RAGDPVGGCY 120 RTILNLHRQI NLCQAELQFV YRQIFRVKAA AIQVQPNINT KACSLNEINN SILGFDFSPI 180 PCLHEFDIST SIGEGSNSQI VEGERLEGFN NEKFEAKTVM SICNDKQSIV EHGDFKPYFG 240 NFHDYKGKGI ATELR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-26	45	146	12	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-26	45	146	12	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582127.1	0.0	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	1e-39	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A1U8HFD1	0.0	A0A1U8HFD1_CAPAN; LOB domain-containing protein 22-like
STRING	XP_009607074.1	3e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14294	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-37	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]