PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g03020
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 167aa    MW: 19048.1 Da    PI: 6.2672
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g03020genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31103161159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++ed ++v++tYeg Hnh+
  CA08g03020 103 LDDGYKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKEDSRYVITTYEGVHNHQ 161
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-3389161IPR003657WRKY domain
SuperFamilySSF1182901.96E-2896161IPR003657WRKY domain
PROSITE profilePS5081130.37798163IPR003657WRKY domain
SMARTSM007747.7E-36103162IPR003657WRKY domain
PfamPF031061.3E-24104161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAANNPSANM LDGSFRSLDS PDSDDFSNHL INFELSDILE IDNWPIQQDP TLIPQYSNYA  60
ANQVVNTSSY QEEPSNNIGS SSSKRKEVKD KVAFRMLSQI EILDDGYKWR KYGKKMVKNS  120
PNPRNYYRCS VEGCPVKKRV ERDKEDSRYV ITTYEGVHNH QGLSPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2493160774Probable WRKY transcription factor 4
2ayd_A1e-2491160271WRKY transcription factor 1
2lex_A1e-2493160774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1911670.0DQ191167.1 Capsicum frutescens putative WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582129.11e-121PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A2G2YWP01e-121A0A2G2YWP0_CAPAN; Putative WRKY transcription factor 13
STRINGSolyc08g062490.2.16e-97(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.18e-41WRKY DNA-binding protein 51