PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g03370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CPP
Protein Properties Length: 690aa    MW: 74432.1 Da    PI: 6.9571
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g03370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.81.4e-15551589341
         TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                 +k+CnCkk+kClk+YC+Cfaag++C  +C+C++C+N+ e
  CA08g03370 551 CKRCNCKKTKCLKLYCDCFAAGVYCVGSCTCQGCFNRPE 589
                 79**********************************876 PP
2TCR50.83.4e-16638676139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+CkN 
  CA08g03370 638 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNV 676
                 589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.8E-14549590IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.907550678IPR005172CRC domain
PfamPF036382.1E-11552587IPR005172CRC domain
SMARTSM011141.6E-17638679IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11640675IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MLAVPRNDCF SSFNVFLLLL YFGLQDSPVF NYISNLSPIQ PVKGAPIVQY FPGLNSPPLL  60
FTSPRINAQS QSSLLKRSQF PQLSSEAFCG KNEDYNNVVT DSDGTRVSVS PPRSGLNPFV  120
QKISDNSIFV HEQSGSPIRC VDEFLVDVSN SESGNPSNST NTSLKVADSI PQSPNSAGDL  180
KESVANIASK DARQDEIPEV AARVVVEQAE QDNKENSSYN QKDIGACSSN TDPDLPPTSL  240
CTEIVPYLPA HSSSHYHYGD RHMAQFSRVD CTMLDEASNI PIESLETACD CRNDSDTIST  300
MSVAPDESIV QHDSQTKAGQ HQSGISRRCL QFEDAQQKIA PASSGSQSAS GIVSCSVAPV  360
SPAVLEVVEQ GSSNRSSTAN DRPLTQLASS SVDSEKLTVK VPKPSGIGLH LNSIVNGMEA  420
GSGATVSVKS TERGNLSICG KKLTSMVSCH PSKNMKNCLI SSNVVGSNLT SGDNDGRHES  480
YVPNTESVSA SFSLNNAKPL NDTVLLKPTE HTSSHKRKFN SEHIDSPMDY NLSSPQKKRQ  540
KTSDGNVGDG CKRCNCKKTK CLKLYCDCFA AGVYCVGSCT CQGCFNRPEY EDTVLDVRQQ  600
IQCRNPLAFA PKVVQHSTDS PTNVVAEDGS SFTPSSARHK RGCNCKKSMC LKKYCECYQA  660
NVGCSSGCRC EGCKNVYGRK EGFPIKYMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1855267612121Protein lin-54 homolog
5fd3_B9e-1855267612121Protein lin-54 homolog
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537847.10.0PREDICTED: uncharacterized protein LOC107839029
TrEMBLA0A2G2YX660.0A0A2G2YX66_CAPAN; Uncharacterized protein
STRINGSolyc08g067150.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69802128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-63TESMIN/TSO1-like CXC 2