PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g07620
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 148aa    MW: 16633.9 Da    PI: 4.8841
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g07620genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.1e-19957149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                krie+k +r++tf+kRr+g++KKA+EL   Cda++avi fs  g+++ +
  CA08g07620  9 KRIEDKAKRHTTFTKRRQGLFKKAKELVKRCDAQAAVITFSLAGNIFAF 57
                79****************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.619161IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-17323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-24376IPR002100Transcription factor, MADS-box
PfamPF003194.6E-191057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KAKELVKRCD AQAAVITFSL AGNIFAFGHP  60
SVDSVVNRYT AAPEQDEEAE KKGEDGVVDE ETKEDEETGM FEVPVKDMDM EELEKLNVAM  120
EEMKKKVVDR INGIVSSSKN EEDLGLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-13195192MEF2C
5f28_B2e-13195192MEF2C
5f28_C2e-13195192MEF2C
5f28_D2e-13195192MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538126.11e-103PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1U8DVE91e-101A0A1U8DVE9_CAPAN; Uncharacterized protein
TrEMBLA0A2G2W6I11e-101A0A2G2W6I1_CAPBA; Uncharacterized protein
TrEMBLA0A2G2YXS91e-101A0A2G2YXS9_CAPAN; agamous-like MADS-box protein AGL61
TrEMBLA0A2G3BT571e-101A0A2G3BT57_CAPCH; Uncharacterized protein
STRINGXP_009617757.17e-74(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-22AGAMOUS-like 61