PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g08240
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 330aa    MW: 37050.6 Da    PI: 6.3506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g08240genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.7e-27131191259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+ + +++e+tY+g+H ++
  CA08g08240 131 EDGFSWRKYGQKDILGANHPRAYYRCTHRhtqGCLATKQVQRSDGNSTIFEVTYKGRHSCK 191
                 8***************************98999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-27119192IPR003657WRKY domain
PROSITE profilePS5081122.01125193IPR003657WRKY domain
SuperFamilySSF1182901.83E-24129192IPR003657WRKY domain
SMARTSM007744.6E-39130192IPR003657WRKY domain
PfamPF031062.2E-25131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEKVKGLEKK KLISELTQGK EFVKQLKKQI GPLASPEECD LLLGKILSSL EKSLSILNLK  60
ALLLEGGINA NNSTSSCSSI SFLGNNNSPM SEVFDSPSHH LDKNMVSKKR KKSQETNQIT  120
ISGTGLEGSH EDGFSWRKYG QKDILGANHP RAYYRCTHRH TQGCLATKQV QRSDGNSTIF  180
EVTYKGRHSC KVAQSDIFSL NNQKRQKHNK KQEQEMVIFN STPNHDAENF NITTKEEVFT  240
PFSFPPTPLN LENIEETKFF CDSMVPLLTS QNQEFGMDYM TLHCSNSDLT ELISTPTPTS  300
ISNSSFVGDW DLSEDFEPNV IFDIEEFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-19131191969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4545851e-179GU454585.1 Solanum lycopersicum WRKY transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538198.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1U8DT610.0A0A1U8DT61_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YY570.0A0A2G2YY57_CAPAN; probable WRKY transcription factor 53
STRINGXP_009628746.11e-164(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.15e-36WRKY family protein