PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g08510
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 125aa    MW: 14373.5 Da    PI: 8.917
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g08510genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-10391022380
                 .HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
          B3  23 aeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                 + +       ++++  +++++++d++ +  ++kl+ +++ gr+v+ +GW++  k+n+L+ gD++
  CA08g08510  39 CWKLlddliaSEDNDIGVQVRVMDPRCKFHDMKLNRWNSVGRFVFNRGWNSLLKENKLEKGDTL 102
                 3333555555344457899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1111109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1212109IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-749102IPR003340B3 DNA binding domain
CDDcd100179.94E-1051122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAIRLGGGSR PVYIARKQVE NSDFSLQQSR LLITASTHCW KLLDDLIASE DNDIGVQVRV  60
MDPRCKFHDM KLNRWNSVGR FVFNRGWNSL LKENKLEKGD TLDLWHFETP LNQPCFAINI  120
IKNQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339801.12e-35PREDICTED: B3 domain-containing protein At2g32645-like
TrEMBLA0A2G2YY797e-88A0A2G2YY79_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000003142e-34(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116791115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20600.15e-08B3 family protein