PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g08650

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 244aa MW: 27633.8 Da PI: 5.0644

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g08650	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	4.9e-19	43	94	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ft+eq++ Le+ Fe + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k CA08g08650 43 RRFTDEQIKSLETIFETETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 94 48*************************************************9 PP
2	HD-ZIP_I/II	124.2	6.1e-40	42	132	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+++eq+k+LE+ Fe+e+kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ Lk++yd+l+++ e+L+ke+++L +l++ CA08g08650 42 ARRFTDEQIKSLETIFETETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILKSNYDNLASQYESLKKEKQSLLIQLQK 132 69***********************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.27E-19	21	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	36	96	IPR001356	Homeobox domain
SMART	SM00389	7.6E-16	39	100	IPR001356	Homeobox domain
CDD	cd00086	9.93E-16	43	97	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-20	43	103	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-16	43	94	IPR001356	Homeobox domain
PRINTS	PR00031	1.0E-5	67	76	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	71	94	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	76	92	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-16	96	136	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MFDVGEFSPT SSAALSAECF SSSSCFSSPS SSKKKKINSN NARRFTDEQI KSLETIFETE 60 TKLEPRKKLQ LARELGLQPR QVAIWFQNKR ARWKSKQLER DYSILKSNYD NLASQYESLK 120 KEKQSLLIQL QKLNDVMKKD SIGLDSDKRA DAIKKNIEMD GRPSLSFDLS EHGANGVISD 180 DDSCIKPNYL GLNEDTDHHL LKMVEAGDSS LTSPENWGSL DEDGLLDQQP SSTTYDQWWD 240 FWS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-118	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538251.1	1e-179	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Refseq	XP_016538252.1	1e-179	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Swissprot	P46897	4e-64	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A1U8DTA9	1e-177	A0A1U8DTA9_CAPAN; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A1U8DVR6	1e-177	A0A1U8DVR6_CAPAN; homeobox-leucine zipper protein ATHB-12-like
STRING	Solyc01g096320.2.1	1e-117	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	5e-63	homeobox 12

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]