PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g08890
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 184aa    MW: 20899.8 Da    PI: 9.5795
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g08890genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.3e-1745129186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  v +L+ea++ ++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  CA08g08890  45 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsaraNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 129
                 5*************************************87777777888999******************99984.....57****9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-2043129No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDKQAGNHHH QNHEISNKDD YSPKIKPQNY QVATGNNSDR LKRDEWSEGA VSCLLEAYEA  60
KWILRNRAKL KGQDWEDVAK HVSARANSTK SPKTQTQCKN KIESMKKRYR SESATAADAS  120
SWPLYPRLDL LLRGNNASAA SFSLIPXXXX XXXXXXXXXX XXXXXXXXXX XXAAADGFAY  180
WEW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389111e-136AC238911.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-140o23 map 1, complete sequence.
GenBankAC2394361e-136AC239436.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-309d12 map 1, complete sequence.
GenBankHG9755131e-136HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557273.11e-104PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A2G2YYF01e-108A0A2G2YYF0_CAPAN; Uncharacterized protein
STRINGSolyc01g096470.2.11e-84(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.19e-59sequence-specific DNA binding transcription factors