PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g09780
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 91aa    MW: 10338.8 Da    PI: 9.0907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g09780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.7e-126663799
                EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                t++d+ g++W+v +  +k ++ ++++k W++F k + L++g +++F+++g+s+f  +vkvf++
  CA08g09780  6 TIKDLCGNVWDVSVEKSKDGEVFFIGKEWEDFIKYHPLQSGYVLIFTYKGDSSF--TVKVFST 66
                578999********65666666********************************..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.111167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-12675IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-14670IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-10665No hitNo description
PfamPF023625.9E-10666IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MGRGSTIKDL CGNVWDVSVE KSKDGEVFFI GKEWEDFIKY HPLQSGYVLI FTYKGDSSFT  60
VKVFSTNACK NSVAMNIEKI KGRDHVRYKY *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085268.16e-34putative B3 domain-containing protein At5g66980
TrEMBLA0A2G2YYM46e-60A0A2G2YYM4_CAPAN; Uncharacterized protein
STRINGSolyc01g096790.2.18e-32(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1600666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-08B3 family protein