PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g11010
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 171aa    MW: 18783 Da    PI: 10.5148
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g11010genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.51.1e-151255245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                +i  ++ r vtfskRr+g++KKA+EL  +++ ++a ++fs+tgk
  CA08g11010 12 KITKETSRMVTFSKRRKGLFKKAKELESMTGCRIASVVFSPTGK 55
                588899*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.8E-20362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.142357IPR002100Transcription factor, MADS-box
CDDcd001206.51E-22457No hitNo description
SuperFamilySSF554553.14E-19463IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-13525IPR002100Transcription factor, MADS-box
PfamPF003196.4E-211257IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-132540IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-134061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGTGKKKIEI QKITKETSRM VTFSKRRKGL FKKAKELESM TGCRIASVVF SPTGKPYICG  60
DVEYAIQRHF SGNNNNNNNN SRSTEPSTSG LNSRHSNSDD VAVASGDSSG SRSSSSSTPT  120
RKGLHDWVEG IDVERFGNLN RLLMWKKQLE GTRKKIASIE DSESFQALFG *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581849.11e-100PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLA0A2G2YZ371e-122A0A2G2YZ37_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000578557e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-10AGAMOUS-like 29