PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g11020
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 180aa    MW: 19963.5 Da    PI: 10.336
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g11020genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93e-142874248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                +i  ++ r  tfskRr+g++KKA+E   +++ +va i+fss+g+ y+
  CA08g11020 28 KITKQTSRMATFSKRRKGLFKKAKEFESMTGSRVASIVFSSSGRPYT 74
                688999*************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-171978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.8621979IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-172079IPR002100Transcription factor, MADS-box
CDDcd001209.70E-202074No hitNo description
PRINTSPR004048.1E-132141IPR002100Transcription factor, MADS-box
PfamPF003195.7E-192874IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-134156IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-135677IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQNLLVEEEE KKKLRRMGTG KKKIEIQKIT KQTSRMATFS KRRKGLFKKA KEFESMTGSR  60
VASIVFSSSG RPYTCGDVNS VIQKHFSGNS SSRCTEPSTS GLNSHHSNSE DVVVASGDSS  120
GSRWSSTPRK NGLRHWVESI DVEGCQNLNQ LLMLKQQLEG TREKIASIED SESFQALFA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582225.11e-129PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G2YZ401e-128A0A2G2YZ40_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000578443e-66(Solanum tuberosum)
STRINGPGSC0003DMT4000578553e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.13e-11M-type_MADS family protein