PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g11220

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 233aa MW: 25615.4 Da PI: 6.5823

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g11220	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	77.4	2.5e-24	53	123	30	100
DUF260 30 fanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +a vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+aelal++++ CA08g11220 53 HATVHKVFGASNVSKLLLHIPANRRQDAVVTVTYEAQARLSDPVYGCVSTILALQQQVASLQAELALVQTQ 123 678****************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.328	23	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-23	54	121	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDEPLTLPLT SNMDEPPSDG ASDQNRRIRG LGKRAAXXXX RALFRLPRPL VVHATVHKVF 60 GASNVSKLLL HIPANRRQDA VVTVTYEAQA RLSDPVYGCV STILALQQQV ASLQAELALV 120 QTQVMNSRYA VANSFQYSQQ QQQEQHVAIL QPSYSNNSSV SNNIKLINNI NGASNFNNST 180 SSTAFDHQLH GSADTCTANN SPSFDPIHQL HDEEEEESHN PLAFTNHMFH SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-21	54	133	41	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-21	54	133	41	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	7e-62	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016581848.1	1e-124	PREDICTED: LOB domain-containing protein 20-like
TrEMBL	A0A2G3BU77	1e-144	A0A2G3BU77_CAPCH; LOB domain-containing protein 20
STRING	PGSC0003DMT400057829	1e-76	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	9e-28	LOB domain-containing protein 20