PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g12100
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 333aa    MW: 35655.4 Da    PI: 6.7164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g12100genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.6e-09166191227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 k e Cr +  +GtC++G++C+F Hg+
  CA08g12100 166 KSETCRWWEDFGTCRFGSKCRFVHGK 191
                 6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-12161196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-8163196IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012164191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089164192IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6166191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEFFYGSSND SFDGDVSPII GRSRFYHGSK SQILDPYASS DSTGSNIVSP LARYLCPTSP  60
VPFTSDSPKR RSLNSGSRSG SGXXXXXXXX XXXSGGGGIV SRSPLASIEN IEIPPVFRNP  120
VKVEEDVVVM DGILVEPKHG VRGKSSPSTS DSGGRLTSGS ENSFHKSETC RWWEDFGTCR  180
FGSKCRFVHG KEDLRPTAFA NRNQSEALYS RSYSSGSSSY GPRGRSVHHQ VHSAAPTPTE  240
AAAAAMATPT TTSNVKKGDK EPSSSESSTT SISTIAISGT DWSPLDDNIE VTLPSSGEKC  300
ASRDDVDAHI RTVLYAPSGR KRLPVFADFD EE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555364.10.0PREDICTED: tristetraprolin-like
TrEMBLA0A2G2Y0E10.0A0A2G2Y0E1_CAPAN; Uncharacterized protein
STRINGSolyc10g047040.1.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-06C3H family protein