PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g12450

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 688aa MW: 77824.4 Da PI: 5.7692

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g12450	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376	4.8e-115	308	678	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + lL++cA+a++s d + a++lL r++e++sp+gd ++Rla+y+++AL+arl+++++ ly a+++s+ s ++ l+a+k+f ++P+ +s++ aN+ CA08g12450 308 RGLLTQCAQAMASYDSRTATELLMRIREHSSPYGDGTERLAHYLANALEARLSGTGTALYTAFASSRIS---AAQILKAYKAFITACPFRLLSNIFANK 403 679********************************************************99999998...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 I + ++ge ++HiiDf+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g +e++eetg+rL+k++++++vpf f++ +ak++e++++eeL+++ CA08g12450 404 YIRKLIAGEPKIHIIDFGILYGFQWPCLIQGLSMRPGGPPELRITGIDLPQPGfkPAERVEETGRRLEKYCKRFKVPFVFKA-IAKKWESITVEELEIQ 501 ************************************************999***********************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++E+l+Vn+ ++l +++de+v ++s+rd+vL+l+++++P+++++ + n++ F++rf eal +ys+lfd++ea+lpre+e+r+ E+e+++r+++n CA08g12450 502 RDEVLIVNSLYRLGNIPDETVVQNSPRDAVLDLIRRIRPDMFIHGVLNGTFNTPFFVTRFREALFHYSSLFDMFEASLPREDEDRKLFEEEVFARDAMN 600 *********************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+aceg+er+er et+++W+ r +aGFk++pl+++++k+++ +r + + ++v+e+ ++++gWk+r L+++S+W+ CA08g12450 601 VIACEGTERVERPETYKQWQLRCVRAGFKQLPLDQEIVKTVSNKVRSEYHKDFSVDEDGRWMLQGWKGRVLYALSCWK 678 *******************************************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.455	281	658	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-112	308	678	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MEALFQEQLF HSPDAFIFRH SSIPMDPRND FVQNGTSTIF NNLASFDEDY PHALSNHVVG 60 EGNSSPPPQE EGEGEGXDYS DAMYKFLSQM LMEEDDLENK PCMFHDCMAL QATEKYLSDV 120 LHGSENYNSP QSVIINPQDY SSSLLSNTSP DSIESPQWNL DFESPVSVEG LSGVSNHDSL 180 FTSFGNNQFN LLYKGSEEEE PANIFQSGSS SNSPTDSRKK KNRHRGDAAA DQQKSNKQLA 240 TFAHDESEPL EMYDNVLLCL NNPYVEQHSA TSVTSCSPNE TKKTTKVGRP KGGRKHGSNI 300 KKEVVDLRGL LTQCAQAMAS YDSRTATELL MRIREHSSPY GDGTERLAHY LANALEARLS 360 GTGTALYTAF ASSRISAAQI LKAYKAFITA CPFRLLSNIF ANKYIRKLIA GEPKIHIIDF 420 GILYGFQWPC LIQGLSMRPG GPPELRITGI DLPQPGFKPA ERVEETGRRL EKYCKRFKVP 480 FVFKAIAKKW ESITVEELEI QRDEVLIVNS LYRLGNIPDE TVVQNSPRDA VLDLIRRIRP 540 DMFIHGVLNG TFNTPFFVTR FREALFHYSS LFDMFEASLP REDEDRKLFE EEVFARDAMN 600 VIACEGTERV ERPETYKQWQ LRCVRAGFKQ LPLDQEIVKT VSNKVRSEYH KDFSVDEDGR 660 WMLQGWKGRV LYALSCWKPT RLSAKLI*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MEALFQEQLF HSPDAFIFRH SSIPMDPRND FVQNGTSTIF NNLASFDEDY PHALSNHVVG  60
EGNSSPPPQE EGEGEGXDYS DAMYKFLSQM LMEEDDLENK PCMFHDCMAL QATEKYLSDV  120
LHGSENYNSP QSVIINPQDY SSSLLSNTSP DSIESPQWNL DFESPVSVEG LSGVSNHDSL  180
FTSFGNNQFN LLYKGSEEEE PANIFQSGSS SNSPTDSRKK KNRHRGDAAA DQQKSNKQLA  240
TFAHDESEPL EMYDNVLLCL NNPYVEQHSA TSVTSCSPNE TKKTTKVGRP KGGRKHGSNI  300
KKEVVDLRGL LTQCAQAMAS YDSRTATELL MRIREHSSPY GDGTERLAHY LANALEARLS  360
GTGTALYTAF ASSRISAAQI LKAYKAFITA CPFRLLSNIF ANKYIRKLIA GEPKIHIIDF  420
GILYGFQWPC LIQGLSMRPG GPPELRITGI DLPQPGFKPA ERVEETGRRL EKYCKRFKVP  480
FVFKAIAKKW ESITVEELEI QRDEVLIVNS LYRLGNIPDE TVVQNSPRDA VLDLIRRIRP  540
DMFIHGVLNG TFNTPFFVTR FREALFHYSS LFDMFEASLP REDEDRKLFE EEVFARDAMN  600
VIACEGTERV ERPETYKQWQ LRCVRAGFKQ LPLDQEIVKT VSNKVRSEYH KDFSVDEDGR  660
WMLQGWKGRV LYALSCWKPT RLSAKLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-46	313	679	25	380	Protein SCARECROW
5b3h_A	1e-46	313	679	24	379	Protein SCARECROW
5b3h_D	1e-46	313	679	24	379	Protein SCARECROW
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ241734	0.0	DQ241734.1 Capsicum annuum GRAS transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538732.1	0.0	PREDICTED: scarecrow-like protein 14 isoform X1
TrEMBL	A0A2G2XY67	0.0	A0A2G2XY67_CAPAN; Scarecrow-like protein 14
STRING	Solyc01g100200.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein