PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g13660

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 195aa MW: 22961.9 Da PI: 8.8619

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g13660	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.2	9.6e-51	41	166	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++++ + CA08g13660 41 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENSRSI 138 79*************************.89***********8778899***************************************** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+g+apkg +++W+m+eyrl CA08g13660 139 GLKKTLVFYSGKAPKGIRSSWIMNEYRL 166 ************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-54	40	172	IPR003441	NAC domain
PROSITE profile	PS51005	52.419	40	184	IPR003441	NAC domain
Pfam	PF02365	7.6E-26	42	166	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MAIVPFTTTM SQSQQQQDHD NINNNTIKGD DDDDHEHDMV MPGFRFHPTE EELVEFYLRR 60 KVEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWYFYV PRDRKYRNGD RPNRVTTSGY 120 WKATGADRMI RTENSRSIGL KKTLVFYSGK APKGIRSSWI MNEYRLPQHE TERLQKVSCI 180 YIRSHHVLAL NSKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-55	42	166	19	142	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-55	42	166	19	142	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-55	42	166	19	142	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-55	42	166	19	142	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	42	166	22	145	NAC domain-containing protein 19
3swm_B	1e-54	42	166	22	145	NAC domain-containing protein 19
3swm_C	1e-54	42	166	22	145	NAC domain-containing protein 19
3swm_D	1e-54	42	166	22	145	NAC domain-containing protein 19
3swp_A	1e-54	42	166	22	145	NAC domain-containing protein 19
3swp_B	1e-54	42	166	22	145	NAC domain-containing protein 19
3swp_C	1e-54	42	166	22	145	NAC domain-containing protein 19
3swp_D	1e-54	42	166	22	145	NAC domain-containing protein 19
4dul_A	9e-55	42	166	19	142	NAC domain-containing protein 19
4dul_B	9e-55	42	166	19	142	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-117	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538913.1	1e-132	PREDICTED: NAC transcription factor 25
Swissprot	Q9ZVP8	3e-96	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1U8DV76	1e-131	A0A1U8DV76_CAPAN; Putative NAC domain-containing protein 94
TrEMBL	A0A2G2XXN5	1e-131	A0A2G2XXN5_CAPAN; NAC transcription factor 25
STRING	XP_009626107.1	1e-115	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	7e-96	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]