PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g14260

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ZF-HD

Protein Properties

Length: 86aa MW: 9498.6 Da PI: 6.7023

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g14260	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	72.2	8.1e-23	9	64	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y eC++N Aa+ gh++DGCgEf+p+ ++ t++++ aAC CHRnFHR+ ++ CA08g14260 9 VVKYLECRHNYAARFNGHVLDGCGEFCPAGAHDDTPESFISAACHCHRNFHRKVEV 64 589************************8888******************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-11	3	67	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.4E-20	10	63	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-20	11	61	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	19.985	12	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MTSNNKHFVV KYLECRHNYA ARFNGHVLDG CGEFCPAGAH DDTPESFISA ACHCHRNFHR 60 KVEVEVEAGV ELPIFSINHP NNGTC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010314609.1	6e-40	zinc-finger homeodomain protein 4-like
Swissprot	Q9M9S0	5e-13	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A2G2XU75	2e-54	A0A2G2XU75_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2Y1Z3	5e-54	A0A2G2Y1Z3_CAPAN; Uncharacterized protein
STRING	Solyc01g103830.1.1	3e-39	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10889	11	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-15	homeobox protein 31