PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g14280

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ZF-HD

Protein Properties

Length: 97aa MW: 10865.5 Da PI: 6.0663

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g14280	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	73	4.7e-23	9	63	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y eC++N Aas ++++DGCgEf+++ g++gt++ + CaAC+CHR+FHR+ ++ CA08g14280 9 VVKYLECMHNYAASSMSYVFDGCGEFCSA-GAQGTPDFFICAACQCHRSFHRKMEV 63 589***********************9.999*****************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	9.5E-21	10	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-13	10	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.9E-19	11	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	19.458	12	61	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MASNNKHLVV KYLECMHNYA ASSMSYVFDG CGEFCSAGAQ GTPDFFICAA CQCHRSFHRK 60 MEVEVESEAE LPINGTYLVE IRKIIYTFIY LISTSF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582292.1	1e-52	PREDICTED: zinc-finger homeodomain protein 3-like
Swissprot	Q9ZPW7	4e-16	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A1U8HFU6	2e-51	A0A1U8HFU6_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2Y201	2e-51	A0A2G2Y201_CAPAN; zinc-finger homeodomain protein 3-like
STRING	Solyc01g103830.1.1	3e-27	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10889	11	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	2e-18	homeobox protein 24