PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g14330
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 130aa    MW: 15077.3 Da    PI: 9.17
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g14330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-16854450
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                + k ++  t+  R++ i  KA ELS+LCd++v+ ii s++g+l++++
  CA08g14330  8 KKKPKNPKTYQVRKECIKRKAMELSTLCDIKVCTIITSPQGELQTWP 54
                566677789*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0038156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.596153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-16982IPR002100Transcription factor, MADS-box
PfamPF003191.2E-111553IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAEEDQSKKK PKNPKTYQVR KECIKRKAME LSTLCDIKVC TIITSPQGEL QTWPENLDAV  60
KEVLDLYTQN LKPEKKRKAS SSEEKDEEED KREKDILTLV ESKLDAVNKR IRFLENKNVV  120
DKGKKQRIE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539049.12e-87PREDICTED: agamous-like MADS-box protein AGL103
TrEMBLA0A1U8E5F85e-86A0A1U8E5F8_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y1W85e-86A0A2G2Y1W8_CAPAN; agamous-like MADS-box protein AGL103
STRINGPGSC0003DMT4000683567e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.15e-11AGAMOUS-like 98