PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g14850
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 677aa    MW: 75816.9 Da    PI: 6.4751
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g14850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.7e-22128232198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                 f+k+lt sd++++g +++ +++a+e+       +++    ++l+  d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F ++  + +++
  CA08g14850 128 FCKTLTASDTSTHGGFSVLRRHADEClpqldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFLRQvYEgENG 224
                 99****************************964333..4459***********************************************9544344999 PP

                 ..EEEEE- CS
          B3  91 elvvkvfr 98 
                 el+v+v+r
  CA08g14850 225 ELRVGVRR 232
                 9****997 PP
2Auxin_resp110.31.9e-36258339183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st++ F+v+Y+Pr  +seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d+ ++rWp+S+WrsLk
  CA08g14850 258 ASHAISTGTFFSVFYKPRY-QSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDSTSSRWPDSEWRSLK 339
                 789***************6.9************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-41117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-38125247IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-20126232No hitNo description
PROSITE profilePS5086310.941128234IPR003340B3 DNA binding domain
SMARTSM010194.0E-18128234IPR003340B3 DNA binding domain
PfamPF023622.1E-20128232IPR003340B3 DNA binding domain
PfamPF065072.8E-34258339IPR010525Auxin response factor
PfamPF023092.4E-5554596IPR033389AUX/IAA domain
SuperFamilySSF542775.95E-11559637No hitNo description
PROSITE profilePS5174525.265560653IPR000270PB1 domain
PfamPF023091.5E-5604651IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MANLSGNNFV GVAHPGAPKN DALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST  60
HQGLDQQLPS FNLPAKILCK VMTVQLRAEP ETDEVYAQIT LIPEQDQGEI TSPDPPLPEP  120
QKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPQLDMS QQPPWQELVA SDLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRQVYE GENGELRVGV RRLMRQLNNM  240
PSSVISSHSM HLGVLATASH AISTGTFFSV FYKPRYQSEF IVSVNKYLEA RNHKLSVGMR  300
FKMRFEGEEV PERRFSGTIV GVGDSTSSRW PDSEWRSLKV HWDEPSSILR PDRVSPWEME  360
PLVTATPTNT QPLQRNKRAR PPVLPSPVKE LPALGLESFS SAASLLLLMY TRSHWQLSFY  420
SPSSFSYCDP SRARDLYPSP KLSSAAKGLG YGENGSMPLS TKMYWPSQSE TCTESVAPAS  480
EKRPANGYRL FGIELLDRPT IDETSLVSKP HAVMEDQPDP SLDVECDQHS EPLNPIPSLS  540
FEPEKSPLRS SHESQSKQIR SCTKVHMQGK AVGRAVDLTR LAGYDDLLKK LEEMFEIEGE  600
LVGSTKKWLV VFTDDEDDMM MVGDDPWREF CSMVRKIYVY TAEEAKRLSP KIKLPVDDVK  660
PGNPVSDATV SNEGKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01536211355Auxin response factor 1
4ldw_A0.01536211355Auxin response factor 1
4ldw_B0.01536211355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0611540.0HM061154.1 Solanum lycopersicum auxin response factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538949.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2G2Y1T20.0A0A2G2Y1T2_CAPAN; Auxin response factor
STRINGSolyc01g103050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]