PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g14990

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 673aa MW: 77080.6 Da PI: 8.1815

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g14990	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.9e-20	55	148	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY e+Ak +GFs+r+++++ + + t+r fvC + g++ + +++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel CA08g14990 55 EFYAEFAKGCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKAANDNKPQRNRKSSRCGCQAYMRISKTTelgVPEWRVTGFTNHHNHELL 148 6************9998877356667999************99******************99777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-17	55	148	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-20	271	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.668	549	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.9E-7	552	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-5	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MMEIYGDTSD QRSLSLDDTS STEESPDQTR LSLETTNEAV PYIGLRFHNH DAAYEFYAEF 60 AKGCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKA ANDNKPQRNR KSSRCGCQAY 120 MRISKTTELG VPEWRVTGFT NHHNHELLEP NQVRFLPAYR SISDADKSRI IMFAKTGISV 180 QQMLRLMELE KGVEPGYLPF TEKDVRNLLQ SFRKVDPEDE SIDLLRMCRN IKEKDPNFKY 240 DFSLDSNNRL ENIAWSYASS IQSYDIFGDA VVFDTTHRLT ALDMPLGIWV GVNNYGMPCF 300 FGCVLLREET LRSYSWALKA FLAFMNGKAP QTVLTDQNMC LKEAINLEMP TTKHALCIWL 360 VVAKYPSWFN AVLGERYNEW KAEFNRLYNL ESVEDFELGW RDMVNSFGLH TNRHIASLFS 420 LRSLWALPYL RSHFFAGMTT TSHSKSINAF IQRFLSAQTR LAHFVEQVAV TVDFKDQTGE 480 QQTMQQNLQN ICLKTGAPME AHAATVLTPF AFSKLQEQLV LAAHYASFQV EDGFLVRHHT 540 KLEGGRKVYW VPREGIINCS CHQFEFSGIL CRHALRVLST GNCFQIPERY LPHRWRRIST 600 PATKVLQNTQ SDHTERVQLL QSMVSTLVTE SAKSRERLDI ATENVSILLS RIREQPICSQ 660 GIRDLSSNQR NL*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MMEIYGDTSD QRSLSLDDTS STEESPDQTR LSLETTNEAV PYIGLRFHNH DAAYEFYAEF  60
AKGCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKA ANDNKPQRNR KSSRCGCQAY  120
MRISKTTELG VPEWRVTGFT NHHNHELLEP NQVRFLPAYR SISDADKSRI IMFAKTGISV  180
QQMLRLMELE KGVEPGYLPF TEKDVRNLLQ SFRKVDPEDE SIDLLRMCRN IKEKDPNFKY  240
DFSLDSNNRL ENIAWSYASS IQSYDIFGDA VVFDTTHRLT ALDMPLGIWV GVNNYGMPCF  300
FGCVLLREET LRSYSWALKA FLAFMNGKAP QTVLTDQNMC LKEAINLEMP TTKHALCIWL  360
VVAKYPSWFN AVLGERYNEW KAEFNRLYNL ESVEDFELGW RDMVNSFGLH TNRHIASLFS  420
LRSLWALPYL RSHFFAGMTT TSHSKSINAF IQRFLSAQTR LAHFVEQVAV TVDFKDQTGE  480
QQTMQQNLQN ICLKTGAPME AHAATVLTPF AFSKLQEQLV LAAHYASFQV EDGFLVRHHT  540
KLEGGRKVYW VPREGIINCS CHQFEFSGIL CRHALRVLST GNCFQIPERY LPHRWRRIST  600
PATKVLQNTQ SDHTERVQLL QSMVSTLVTE SAKSRERLDI ATENVSILLS RIREQPICSQ  660
GIRDLSSNQR NL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538964.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2G2Y1N4	0.0	A0A2G2Y1N4_CAPAN; Protein FAR1-RELATED SEQUENCE 11
STRING	XP_009765793.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]