PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g15460

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 196aa MW: 22326.7 Da PI: 4.4787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g15460	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.8	3e-38	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF Ptdeelvv++L++kv+ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r + +r+t++gyWk+ g d++++s+ +++ CA08g15460 8 LPPGFRFYPTDEELVVHFLHRKVALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITENGYWKSLGVDEPIFSSsSDS 97 79***********************999.99**********977778899**9854........799************986777 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+kk +fy g++p+g kt+Wvm+e++l CA08g15460 98 NIGMKKYYAFYLGEKPEGAKTNWVMQEFSL 127 8*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-48	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	46.603	8	162	IPR003441	NAC domain
Pfam	PF02365	2.3E-22	9	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGDSNVNLPP GFRFYPTDEE LVVHFLHRKV ALLPCHPDVI PDLDLYPYDP WDLDGKAMAE 60 GNKWYFYSRR TQSRITENGY WKSLGVDEPI FSSSSDSNIG MKKYYAFYLG EKPEGAKTNW 120 VMQEFSLSDS SSASASSRSS SRRKSRSKID YSGWVICRVY ERNCDNDDDD NGTELSCLDE 180 VFLSLDDLDE ISLPH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-39	4	163	16	169	NAC domain-containing protein 19
3swm_B	9e-39	4	163	16	169	NAC domain-containing protein 19
3swm_C	9e-39	4	163	16	169	NAC domain-containing protein 19
3swm_D	9e-39	4	163	16	169	NAC domain-containing protein 19
3swp_A	9e-39	4	163	16	169	NAC domain-containing protein 19
3swp_B	9e-39	4	163	16	169	NAC domain-containing protein 19
3swp_C	9e-39	4	163	16	169	NAC domain-containing protein 19
3swp_D	9e-39	4	163	16	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582307.1	1e-143	PREDICTED: NAC domain-containing protein 104
Refseq	XP_016582308.1	1e-143	PREDICTED: NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-91	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2G2Y376	1e-142	A0A2G2Y376_CAPAN; Uncharacterized protein
TrEMBL	A0A2G3AWK4	1e-142	A0A2G3AWK4_CAPCH; Uncharacterized protein
STRING	XP_009622295.1	1e-113	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	5e-79	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]