PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g16890

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 216aa MW: 23716.6 Da PI: 8.3807

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g16890	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.6	1.3e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg++++ +++++q+++e+ CA08g16890 2 SCNGCRILRKGCNENCILRQSLqgienPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFEACGRTVNPVHGAVGLLWTSNWHVCQSAVET 100 6***********************************************************************************************998 PP DUF260 95 all 97 +l CA08g16890 101 VLK 103 765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.749	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSCNGCRILR KGCNENCILR QSLQGIENPH AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWTSN WHVCQSAVET VLKGGVLRPL PEFSGVATSP 120 AEFYSASEAN DVDLFRSQSS NFKSKRKVMD EIAEDLDLGL SPRTXGKLSR RTEKRRAATP 180 SLNSDESDTT TLESGFMYQQ NPQQGNETKL LRLFF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016539448.1	1e-156	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	5e-68	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2G2Y2H3	1e-157	A0A2G2Y2H3_CAPAN; LOB domain-containing protein 39
STRING	PGSC0003DMT400066165	1e-136	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-70	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]