PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g17170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HB-PHD
Protein Properties Length: 832aa    MW: 91164.8 Da    PI: 5.1939
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g17170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.12.6e-12558611356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 kR ++ +  +++L e F++n+yp++ ++e+L k+lg+t  qV+ WF N R  ++
  CA08g17170 558 KRKAYGEVATKRLYESFKENNYPNRGAKEKLGKELGMTAYQVSKWFENARHCQR 611
                 788999999****************************************97665 PP
2PHD38.33.1e-13214269151
                 SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +C+ Cg+    ++++++lCd +C++ fH+ C++++l +e++p +   wlC+ C++k
  CA08g17170 214 FCAKCGSmdLPADNDIILCDgTCERGFHQLCVEPPLLKEDIPPDdeGWLCPGCDCK 269
                 699****87677********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.75E-13205272IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.5E-12211269IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.95212269IPR019787Zinc finger, PHD-finger
SMARTSM002496.7E-10214267IPR001965Zinc finger, PHD-type
PfamPF006289.8E-11214269IPR019787Zinc finger, PHD-finger
CDDcd155042.20E-27214266No hitNo description
PROSITE patternPS013590215266IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007113.718553613IPR001356Homeobox domain
SuperFamilySSF466893.46E-12553616IPR009057Homeodomain-like
SMARTSM003891.5E-10555617IPR001356Homeobox domain
CDDcd000861.08E-9558607No hitNo description
PfamPF000468.2E-10558611IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-12558608IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MSTLGNTAVS PEKVARTAAG GHSSASAGSM SENPGAEQSR EACDNAVQNL NQSECREKTP  60
GQPRKRKSIS GTPISSTRLL RSKSKEKSGA SEANNTVVTH DAAEEKRRKR RKKKHSKDIA  120
VNEFTRIRGH LRYLLHRITY EQTLIEAYSG EGWKGQSLEK IKLEKELQRA KTHIFRYKLK  180
IRDLFQRLDT LLAQGRLPAS LFDNEGEIDS EDIFCAKCGS MDLPADNDII LCDGTCERGF  240
HQLCVEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTNLSVTDSW EKVYPKEAAA  300
AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNDSEDESS SDESDFYSAS EDLAEAPPKD  360
DEILALSSED SEDDDFNPDD PDKDESVKTE SSSSDFTSDS EDFSLIVDTD MLRGDEQGVS  420
SSVDNSMPNS ASQEEKAKVG KGKRNLLKDE LSYLMQSVSP LVSAKRHIER LDYKKLNDET  480
YGNESSDSSD EEYEGGPSPK VRKFRNAKGA MASPSSTTAD IQYQSGKQKG SGHTSDSGLS  540
EKLKVGGMST PGSRSSGKRK AYGEVATKRL YESFKENNYP NRGAKEKLGK ELGMTAYQVS  600
KWFENARHCQ RHSSRWDTIM SQKVSRESPS SSKMIGEPLG TESKSNMNDA FCNGVEKLEP  660
PNLCSNGEKC HTVNKSEGDV LIQDASGKES GKPTAKVDTT NQGSDVTPFN RTSKKQKAKV  720
RCTNSQNDNM TDQGSDDAPQ NKTSKKQKAK VGTANSQNDN TTDQGSDDTP QNKTSKKQKA  780
KVGTANSQNV DTTDQGADAT PHNKTPKKPN DKVDTPNSQN VRRSSRLQKQ G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113KRRKRRKKK
2107113RKRRKKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539473.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_016539474.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_016539475.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_016539476.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_016539477.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_016539478.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_016539479.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487861e-128PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A1U8DWS60.0A0A1U8DWS6_CAPAN; pathogenesis-related homeodomain protein
TrEMBLA0A1U8DZ870.0A0A1U8DZ87_CAPAN; Uncharacterized protein
STRINGSolyc01g107410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.16e-91Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain