PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g17400
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21565.2 Da    PI: 10.2372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g17400genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.34.6e-191664349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyey 49
                 +n+sn +vtfskR  g++KKA+EL++LC+ae+ +++fs  + +k+y +
  CA08g17400 16 MKNQSNMKVTFSKRPVGLFKKANELCTLCGAEIVIVVFSlgKANKVYSF 64
                58***********************************963367777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-24667IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.974654IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-21791IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-13828IPR002100Transcription factor, MADS-box
PfamPF003192.5E-191664IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-132843IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-134364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MARRSKGRKK VEIVKMKNQS NMKVTFSKRP VGLFKKANEL CTLCGAEIVI VVFSLGKANK  60
VYSFGHPSVE LLVDRFLGRD LPPPNDDGHN HLIMAHRNIG QRGLNKEVMD MQESLQKEKA  120
VGQSLLEFGR RAYDRCCESP IIEGLSLSQL QQLKKALEVQ KRKVEFEAEL RQMVSDALLP  180
LLTFGSALSP SN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582030.11e-138PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8HF821e-136A0A1U8HF82_CAPAN; agamous-like MADS-box protein AGL62
STRINGSolyc01g106730.1.11e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-36AGAMOUS-like 62