PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g17930
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 275aa    MW: 31706.2 Da    PI: 10.0631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g17930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-1613921499
                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +++p  f++++++  e++ + tl+ +sg  W+vkl  r   ++ ++ +GW +F k n+L++g+f+vF+++g  +f  +v++f k
  CA08g17930 13 FHMRIPAYFLRHISE--ESPEKATLKCLSGGIWNVKL--RYDEDGLLIHNGWDKFQKNNQLEDGEFLVFRYNGGLQF--TVRIFTK 92
                3489******88864..46778***************..778888*************************9886666..9999876 PP
2B363.92.4e-20169262199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k l+  +v+ks+ l++pk+f e+ +++  +++t++l++++ ++W+v++i rk+ ++  + +GW++Fv+ n+Lkeg ++vF+l++    el+v+vf++
  CA08g17930 169 FVKCLKGYNVNKSCFLYVPKSFYEQLMKSD-NKTTVVLRNSEEKEWKVNCIGRKGYRA--FCGGWRQFVSGNKLKEGYVCVFQLVN--ANELKVSVFDN 262
                 788899999**************9996554.557****************66666655..668********************986..56669*99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.253193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-20193IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-15190No hitNo description
SuperFamilySSF1019361.33E-20294IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-14293IPR003340B3 DNA binding domain
PfamPF023624.2E-141392IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-22164261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-25164261IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-18169262IPR003340B3 DNA binding domain
CDDcd100173.22E-23169261No hitNo description
PROSITE profilePS5086314.085169263IPR003340B3 DNA binding domain
SMARTSM010194.9E-18169263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MFKRTLLHSE FIFHMRIPAY FLRHISEESP EKATLKCLSG GIWNVKLRYD EDGLLIHNGW  60
DKFQKNNQLE DGEFLVFRYN GGLQFTVRIF TKNGLEREVK STATGKNQQA SVYDRGSKHK  120
RPAKYPFSSK FPEQTRANGE NSTERETPRK RAAVDKAEEG LLTPNIRQFV KCLKGYNVNK  180
SCFLYVPKSF YEQLMKSDNK TTVVLRNSEE KEWKVNCIGR KGYRAFCGGW RQFVSGNKLK  240
EGYVCVFQLV NANELKVSVF DNPSESLLKL AAER*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384991e-72AC238499.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-8l19 map 1, complete sequence.
GenBankHG9755131e-72HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539673.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A2G2Y3U10.0A0A2G2Y3U1_CAPAN; Uncharacterized protein
STRINGXP_009613237.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-22B3 family protein