PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g17960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 572aa    MW: 65434.4 Da    PI: 9.8365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g17960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-1110851798
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                ++p +f+++hg +     t++l  ++   W v +  +k++++++l +GW +F + + +    f++Fk+ ++s+f   v++f+
  CA08g17960 10 RIPDTFVQKHGDE--LLDTVKLIVPTDDFWCVGV--KKTGKMFWLHDGWHGFMEHHSVGCWYFLLFKYGQNSCF--SVHIFD 85
                69********865..667****************..********************************999***..999987 PP
2B366.44.3e-21276364998
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS...SEE..EEEEE- CS
          B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr...sefelvvkvfr 98 
                 +vl++++l +p +f++eh+ k  +s  + l+d++g++W+v+    +++ r++l++GW eFv++n L +gD +vF+l+++   +++ l+v++fr
  CA08g17960 276 NVLRNHILNIPADFVREHMPK--TSGLIELQDSDGNKWNVRR--IRRKMRMILSRGWLEFVRDNSLVVGDACVFELIKDlqaHKRMLKVHIFR 364
                 6899**************855..4559***************..8999999************************997651244556677766 PP
3B366.63.6e-214795611196
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                  ++ +l +p  f+++++ k  +s +++led++g++W+v +i  +++  ++l+kGW +Fv++ngL  gD++vF+l+++ +  el++kv
  CA08g17960 479 VRNYILNIPPGFVQDYMPK--TSEQIKLEDSDGNKWNVHCI--RRKTCMFLSKGWVNFVRDNGLVIGDTCVFELIKDiQADELMLKV 561
                 5677899*********855..5668***************4..44444679**********************99888777766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.107187IPR003340B3 DNA binding domain
SMARTSM010190.0019587IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-13985IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-14985IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-81085IPR003340B3 DNA binding domain
CDDcd100173.92E-111085No hitNo description
Gene3DG3DSA:2.40.330.101.0E-27260365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-26261364IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-22266364No hitNo description
SMARTSM010191.7E-19268366IPR003340B3 DNA binding domain
PROSITE profilePS5086315.975268366IPR003340B3 DNA binding domain
PfamPF023628.6E-19275365IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-27461567IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-27464567IPR015300DNA-binding pseudobarrel domain
CDDcd100176.25E-25467565No hitNo description
SMARTSM010191.0E-16469567IPR003340B3 DNA binding domain
PROSITE profilePS5086315.608469567IPR003340B3 DNA binding domain
PfamPF023623.4E-19480565IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MYVCYFRVQR IPDTFVQKHG DELLDTVKLI VPTDDFWCVG VKKTGKMFWL HDGWHGFMEH  60
HSVGCWYFLL FKYGQNSCFS VHIFDLAATE IDYQFRSHGN AKLRDVAQDL SHRKDKIVGG  120
KSSVEIVDLL ETEQGPENSA KSSELSHGAK RRKMASGRIK HLRCYETRGK ANKLYDDEQL  180
LNGEKLNISG ISLTEPLGAN FVRQSMKAPI HSAAATRDAR ISFTGQQREK SVLHGSTDNC  240
GKRGRPRAAE ANRATNAAKM FTPENPHFMT TLGGYNVLRN HILNIPADFV REHMPKTSGL  300
IELQDSDGNK WNVRRIRRKM RMILSRGWLE FVRDNSLVVG DACVFELIKD LQAHKRMLKV  360
HIFRSRVEEN STNLRTGNIS EPTRSTGKDC TLQFNETKHT ESSDPFEPAS SDRTNHQTNT  420
KSSFTGQQWE KSVLSGSTNN RRKRGRPRLA EANRTNDAAK MFMSENPYFM VTLGEYNTVR  480
NYILNIPPGF VQDYMPKTSE QIKLEDSDGN KWNVHCIRRK TCMFLSKGWV NFVRDNGLVI  540
GDTCVFELIK DIQADELMLK VHIFRKKVEQ K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1724856529141B3 domain-containing transcription factor VRN1
4i1k_B3e-1724856529141B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314320RIRRKMR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539677.10.0PREDICTED: B3 domain-containing transcription factor VRN1
RefseqXP_016539678.10.0PREDICTED: B3 domain-containing transcription factor VRN1
RefseqXP_016539679.10.0PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBLA0A2G2Y3R80.0A0A2G2Y3R8_CAPAN; Uncharacterized protein
STRINGXP_009613233.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-38B3 family protein