PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g17970
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 207aa    MW: 24285.5 Da    PI: 8.7545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g17970genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-101051861093
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                 + k++ l++p + +++++++   +  +t++d+ gr++e k + + k+gr++lt+GW++ +  n ++  D ++ ++++   +++l+
  CA08g17970 105 AKKRDHLYIPVDVVRDYNLE--IPSRMTIRDPAGREFEAKRKDW-KDGRIWLTGGWRNLCWWNLVEKDDRCICEFMRGkGKKSLY 186
                 568899***********888..55579999***********655.55799*******************9999988664555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1592180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1692180IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.1596195IPR003340B3 DNA binding domain
CDDcd100176.32E-797182No hitNo description
SMARTSM010191.1E-499193IPR003340B3 DNA binding domain
PfamPF023624.9E-8106187IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSPTDIAMME KALVKIDDPT CSKRRRVYEE EEETEEDEEE EEEDCEEENE RAGTSKKKAS  60
RSKAGCKRAT TRKMRDIPDL YGADIFKNGR ATQPKNPYFV AKIRAKKRDH LYIPVDVVRD  120
YNLEIPSRMT IRDPAGREFE AKRKDWKDGR IWLTGGWRNL CWWNLVEKDD RCICEFMRGK  180
GKKSLYLQVQ VVYEGSVSNR NNKYKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539681.11e-151PREDICTED: B3 domain-containing protein At5g60140-like
TrEMBLA0A1U8DZU91e-149A0A1U8DZU9_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y3W41e-149A0A2G2Y3W4_CAPAN; B3 domain-containing protein At5g60140-like
TrEMBLA0A2G3BVS01e-149A0A2G3BVS0_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000664705e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60140.12e-12B3 family protein