PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g00050
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 311aa    MW: 35271.3 Da    PI: 6.3428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g00050genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3108.62.8e-3445158199
                 EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+k ltpsdv+k++rlv+pk++ae++               ++++e++  l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++
  CA09g00050  45 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgnnnnsnnnnnDSSTEKGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVMFER 143
                 99*****************************999999999877778999*************************************************9 PP

                 -SSSEE..EEEEE-S CS
          B3  85 dgrsefelvvkvfrk 99 
                 ++++  +l+++++r+
  CA09g00050 144 HRSDADRLFIGWRRR 158
                 8889999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-4337166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-3140158IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-2943147No hitNo description
SMARTSM010192.2E-2945159IPR003340B3 DNA binding domain
PROSITE profilePS5086314.62145159IPR003340B3 DNA binding domain
PfamPF023623.1E-3145159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MFAFNLNNNS TSTINDEDEE QEQQEQEQEK EQNLEHQEIP KEHLFEKPLT PSDVGKLNRL  60
VIPKQHAEKY FPLSGNNNNS NNNNNDSSTE KGLLLSFEDE SGKSWRFRYS YWNSSQSYVL  120
TKGWSRFVKE KRLDAGDIVM FERHRSDADR LFIGWRRRNT AVIPAAAAAQ DTPLPPGMVG  180
PGWAQVYYGG HPYPGPGAGL PYQPDCLHAG RRAMQNQTTA SVNNNTRRQV RLFGVNLECE  240
VDESSWSEPP PTPDGGGSST SSHHHGQDQA SQHYYQYQFQ YSKPHVPAAA SSYNNNNHHN  300
HTVHDSLFYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-52411584113B3 domain-containing transcription factor NGA1
5os9_B9e-52411584113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600246.11e-151PREDICTED: B3 domain-containing protein At2g36080-like isoform X2
SwissprotQ9FNI35e-68Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2G2VWZ01e-176A0A2G2VWZ0_CAPBA; B3 domain-containing protein
STRINGXP_009600245.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-68B3 family protein